Afni3dANALYZEtoAFNI

Afni3dANALYZEtoAFNI is a wrapper for the AFNI (RW Cox, NIH) 3dANALYZEtoAFNI application.
3dANALYZEtoAFNI -- Convert Analyze files to an AFNI dataset.
AFNI 3dANALYZEtoAFNI was written by Robert W. Cox, Medical College of Wisconsin.
For more information about the AFNI package, see the AFNI Homepage

Currently, there is no postscript documentation for this program.

To read the help documentation generated from the command line go here.

To learn about AFNI data types follow this link.

Invocation

java Afni3dANALYZEtoAFNI

Afni3dANALYZEtoAFNI window

Information to be entered

• Analyze dataset(s)
  One or more datasets can be specified. Use the Browse button to look for files.
• Analyze directory
  All of the datasets in the given directory will be used.
• Analyze filelist
  All of the datasets listed in this text file will be used.
• Output prefix
  The general form of the dataset filenames is "prefix+view.NAME" and the text typed in will replace the "prefix" section of the output filename. Note that this program will fail if you specfify a prefix that is already used by another file in the same directory.
• View
  The general form of the dataset filenames is "prefix+view.NAME" and the type selected from the pull-down menu will replace the "view" section of the output filename. One of the following types may be used: orig (Original view), acpc (AC-PC aligned), or tlrc (Talairach-Tournoux grid).
• TR
  This value will be used as the length of time it took to acquire one image. The units may be selected on the right of the text field. You may use milliseconds(ms), seconds(s), or Hertz(Hz). The default value is 1 second.
• Anatomical bucket
  Created an anatomical bucket dataset.
  To learn all about data types, please read the AFNI documentation here.
• Functional bucket
  Create an functional bucket dataset.
  To learn all about data types, please read the AFNI documentation here.
• 3d + time
  The output dataset created will be an anatomical dataset (epan) with the time of repitition given in the TR field.
  To learn all about data types, please read the AFNI documentation here.
• Geometry parent
  The input dataset will match the geometry of this dataset.
• z-axis origin in mm
  If geometry parent is not selected, the center of the 1st slice is put at this location on the z-axis.
• Orientation

• Menubar
• Toolbar
• Output window