AirManualReslice
AirManualReslice is a Java gui wrapper for the AIR 3.08 (Roger Woods, UCLA) manualreslice program.
Given values for
rigid body transformation parameters manualreslice can convert these values
into an into an initialization file, use them to reslice a file , create a
.air file based
on these values, or generate a
.air file
that will interpolate a specified image file to cubic voxels.
For more information about the AIR package
see the AIR 3.08 homepage
AIR documentation for the
manualreslice
program
Invocation
java AirManualReslice
This starts up the java interpreter and runs the AirManualReslice
application. You need to have
set up your environment for java
in order for this to work.
AirManualReslice is also available in the AirToolChest, GlobalWorkbench and GlobalDesktop computing environments.
java AirToolChest
java GlobalWorkbench
java GlobalDesktop
AirManualReslice window
Information to be entered
For those of you accustomed to the interactive usage of this
program, this flowchart may be helpful.
- X-Y-Z axis shift:
These fields are the x y and z axis shift parameters in that order.
- Roll-Pitch-Yaw:
These fields are the roll, pitch, and yaw parameters in that order..
- X-Y-Z axis scale:
These fields are the x y and z axis scaling parameters in that order.
- Save parameters as init file:
If this option is selected, this field specifies a file to save the parameters to.
- Enable Reslice Options:
If this is checked it enables the reslice options window. This allows you to reslice a file based upon the parameters. You must use this option or save the parameters to a file.
-
Reslice Options
- File to reslice:File to be resliced, this must be set.
- Example File:Select this option to define the target space with an example file. You must select a file to use as the example.
- Manual:Select this option to define the target space manually, press the manual settings button and fill in the corresponding fields.
- Save .air file:Check this box if you would like to save a .air file based on the information provided, if selected provide an output file.
- Reslice file:Check this box to reslice the file based on the information provided, if selected provide an output file.
- Cubic voxels:Check this box to use cubic voxels.
- Reflect spatial identity:Check this box to reflect spatial identity, this option only works under the following conditions:
"when the values of pitch, roll, yaw, x-shift, y-shift, and z-shift are all zero and all
scale_down factors are 1. In addition, the dimensions of the target space must be equal to the interpolated dimensions of the reslice space based
upon the top-to-top interpolation model, and the smallest voxel size in each of the two files must be identical."
Only select this option if you are sure you are able to use it as incorrect usage will cause the run to fail.
Last updated Tue Oct 24 16:42:45 EDT 2000