AirReslice
AirReslice is a Java gui wrapper for the AIR 5.2.1 (Roger Woods, UCLA) reslice program.
Reslice creates a new, realigned image based on the parameters in the given .air file.
For more information about the AIR package see the
AIR 5 homepage.
AIR documentation for the
reslice program.
Invocation
java AirReslice
This starts up the java interpreter and runs the AirReslice
application. You need to have
set up your environment for java
in order for this to work.
AirReslice is also available in the AirToolChest, GlobalWorkbench and GlobalDesktop computing environments.
java AirToolChest
java GlobalWorkbench
java GlobalDesktop
AirReslice window
Information to be entered
- Air file/directory
Name of the input reslice parameter
file, or a directory with such files. The .air suffix must be
included if a single air file is specified.
- Output directory
Name of the directory in which to
create output images. If alternate reslice file(s) are provided, then
each output images will be named after the corresponding input image
but with an "r" prefix; if no alternate reslice files are provided,
then each output image will be named with the same basename (name
without .air suffix) as the corresponding air file.
- Use alternate reslice file(s)
Check this box if you want
to use the air file(s) to reslice image(s) other than the one
specified in each air file, and then provide the path to that file or
directory. The alternate image must be spatially equivalent (same
dimensions and voxel sizes) to the default reslice image in the
corresponding air file. You may also specify here a list of images to
reslice, or a directory with such images. If a single image is
specified, a single air file must be specified as well. If multiple
air files and multiple images are specified, then there must be the
same number of each type.
- Options...
Options to pass to the AIR reslice program. See the documentation for
reslice for more details. It is usually safe to leave these untouched.
Below is the only option that is not part of the AIR reslice program.
- Output prefix to alternate reslice file
Prefix to append
to the name of the alternate reslice file when creating the name of
the output image. Not applicable if "Use alternate reslice file(s)"
is not checked. Can be changed to anything, or erased to give the
output images the same names as the alternate reslice files.
Last updated Wed Sep 13 19:40:07 EDT 2000